miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|224237600|gb|GH646555.1|GH646555 CAAAATAATTACTAATAAACGTGACCACTAAATTAACGTAAAACGTCAAAAGAAATGAGTCCAGAATACGTATACACAAA
AAGTCATTTTTACAAATGTACAAACACGTGAAAAGTTCCACTAGACTAGGATGAGTTCATGATGGGTCTCGAGTACACGC
CTTGGTAATAGGACGTGTCCGCTCCTAAAGGCGAAGAGTCGAAGCCCGCTTTCGCCGCCATGGAGCCCATTGAGAGTGCG
CCGGCCATCGGCGAGCTGTAGCCGTAGTGCATCACCTGCTCGTACGTTTTCAGGTCCATTTTGTGGTGATGCTGCTGCTC
GGACGACATAAGGTTGTTGATGGAGAACGGGTGGTTGAAAGCGTAGTGGTGATCTGGCTTCAAGTGCGCGTCGTGCGCAA
GAACCGCGTGGTGCTGCGCCATTAGATGCTGCTGCTGCTGCTGCTGTTGGTGGTGCTGGGAAACTGGTGAGGTGGCGCTG
TGCTCTGGACTCATT




Most similar to sp|P32182|FOXA2_RAT

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P32182|FOXA2_RAT Hepatocyte nuclear factor 3-beta OS=Rattus
          Length = 458

 Score =  127 bits (318), Expect = 4e-29
 Identities = 66/98 (67%), Positives = 69/98 (70%), Gaps = 10/98 (10%)
 Frame = -2

Query: 392 DAHLKPDHHYAFNHPFSINNLMSSEQQHH--------HKMDLKTYEQVMHY--GYXXXXX 243
           +AHLKP+HHYAFNHPFSINNLMSSEQQHH        HKMDLKTYEQVMHY  GY     
Sbjct: 361 EAHLKPEHHYAFNHPFSINNLMSSEQQHHHSHHHHQPHKMDLKTYEQVMHYPGGYGSPMP 420

Query: 242 XXXXXXXXXXXXGFDSSPLGADTSYYQGVYSRPIMNSS 129
                       G D+SPL ADTSYYQGVYSRPIMNSS
Sbjct: 421 GSLAMGPVTNKAGLDASPLAADTSYYQGVYSRPIMNSS 458